First commit
First commit.
added git ignore file
Stop tracking previously committed files per the .gitignore file
Upload remaiming scripts.
Merge branch 'master' of https://bitbucket.org/zzlion/amp-ngs
Upload remaining scripts.
Updated variant filters
Add functions for Hiseq data. Work in progress.
Added support for using FASTQ.gz data as input.
Changed cluster PATHs to new locations.
Add structure variation detection based on BWA MEM SA reads