made protocol of type shell or freemarker, based on this we weave or not
Merge pull request #63 from georgebyelas/master

made protocol of type shell or freemarker, based on this we weave or not
small fix
Merge pull request #64 from georgebyelas/master

small fix
reading parameters from github, will be continued
fix parameters and workflow parsing from github; removed bull-shit tests
compute implementation to  work with online github repositories for workflows
quick fix of pbs workdir value in header
removed lines
Merge pull request #68 from georgebyelas/master

compute implementation to work with online github repositories for workflows
and undefined, if workdir is not defined
Merge pull request #69 from georgebyelas/master

and undefined, if workdir is not defined
analysis of protocol variables
Merge pull request #70 from georgebyelas/master

analysis of protocol variables
new bio vis
changed maverick properties for dasha
Merge pull request #71 from georgebyelas/master

new vis + change maverick settings for dasha
needed files added
misspeling
Merge pull request #72 from georgebyelas/master

needed files added