new notebooks
notebook
Notebooks
Use all 100 systems for bphc and tICA

Look at a projection. Still to do: Visualize water molecules,
build a kinetic model, visualize conformations by tic projection
Distance calc
mend
ugh
Merge branch 'newmcmd' into notebooks

Conflicts:
	ipython/mcmd2.ipynb
Compare C.O.M. distance vs. tICA and Cleanup
Merge pull request #5 from mpharrigan/notebooks

Notebooks