New plot tool: subsampled gene counts

Added a new tool - take a group of BAM files (typically RNA-Seq), subsample them, run cufflinks on all of the subsampled files and plot the number of genes observed versus the subsampled read counts.

Designed to give a more intuitive / biological angle on the preseq complexity plot.
you'd love perl then. You can write your conditions after the actions like
in python, so nice perl can be read by english speakers :D

print "test" if $var == 3;

Is a valid Perl instruction

On Wed, Sep 10, 2014 at 12:21 PM, remiolsen <notifications@github.com>
wrote:

> In bismark/bismark_coverage_curves.pl:
>
> > @@ -81,12 +81,25 @@
> >  }
> >  if(!$config_result){
> >  	die "Error! could not parse command line options..\n";
> > -} elsif(!$quiet) {
> > +}
> > +
> > +# Set the default max coverage
> > +unless($max_cov){
>
> Ah yes, but unless sounds more natural. "Unless this, do that" :P
>
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> <https://github.com/SciLifeLab/visualizations/pull/8/files#r17353316>.
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