Fix quality flaws
Fix some quality flaws
SONAR-5693 Issues on source code disappear while adding the code coverage
Fix some quality flaws
Fix UT
SONAR-5703 Hide context on inactive rule when user cannot activate it on context profile
fix quality flaw
Fixed SearchClient error output to show request
Fixed SearchClient error output to show request
Fix quality flaw
Rename tool scripts
Fix quality flaws
SONAR-5709 Add properties sonar.search.javaAdditionalOpts and sonar.web.javaAdditionalOpts
SONAR-5710 Some JVM options should not be configurable
Merge remote-tracking branch 'origin/branch-4.5'

Conflicts:
	server/sonar-server/src/main/java/org/sonar/server/rule/index/RuleIndex.java
	sonar-batch/src/main/java/org/sonar/batch/scan2/DefaultFileLinesContextFactory.java