fixed centers and edges with ghost
num_ghost fix
Add code for SSPMS43 and update computations for SSP LMM.
Update nosetests for SSPMS32.
Mostly adding comments.
Removing unnecessary variables.
Merge pull request #402 from sanromd/fix_ce_ghost

Fix calculation of ghost cell centers
Using deepcopy for stages of starting methods.
Merge pull request #403 from hadjimy/ssp_lmm_vss

Add code for SSPMS43 and update/correct computations for SSP LMM.
Enable use of pyclaw.io.x where x!=ascii.

Also, fix some problems in pyclaw.io.netcdf.
I still doubt that it's working correctly.
Fix loop bounds that didn't include enough ghost cells.
Merge pull request #407 from ketch/fix_tvd_recon_loop_bounds

Fix loop bounds that didn't include enough ghost cells.
Merge pull request #406 from ketch/enable_netcdf

Enable use of pyclaw.io.x where x!=ascii.
tfluct pointers and object added to flux, solver and tfluct