fixing the pspec_boot not found error. point pspec_pk_k3pk_boot to the correct output directory. also move the pspec.npz file to its correct home on completion
Merge branch 'master' of github.com:dannyjacobs/capo
Merge branch 'master' of github.com:dannyjacobs/capo
Added a calfile to test a couple really long baselines. Still messing with pseudo_inverse function in useful_functions. Added a test to the function to check whether it works.
Created a new calfile for a circular array with a gaussian beam. Partially fixed the pseudo inverse routine -- found a problem with how I was sorting the eigenvector array. But it's still not entirely working.
Improved but still not working pseudo inverse function. Modified sph_harm_coeffs.py to do less typing for each run. renamed the gaussian beam array to be consistent with previous naming scheme.
The pseudo inverse code was working all along. My test was wrong because I forgot that eigenvectors are not guaranteed to be orthogonal when your matrix is not Hermetian. I fixed the test to project out the Z vectors and so now everything works.
In the last commit I broke the get_Q() function by chaning the way it looped through the m values. I fixed that here. Also added some stuff in the window function so that it makes 2d color plots of the matrices.
Added a new function, gsm_noise_covar(), to global_sky_model.py that will calculate the noise covariance for galactic forground emission. It's not quite done b/c I haven't figured out how to go from healpix coords to Img coords.
Fixed the combine_Q() function in sph_harm_coeffs.py so that it does not concatenate the baseline arrays. Finished writing the gsm_noise_covar() function in global_sky_model.py, but haven't fully tested it yet b/c it uses a lot of memory. Though now it should be better since it won't be doing unnecessary baselines b/c of previously mentioned problem.
updated codes: more user-friendly
Changed the gsm_noise_covar() function so that it just calculates Nfg directly instead of calculating G and R first and then multiplying. This keeps memory usage down. Also learned not to put print statements in every iteration of a large loop b/c that makes the Terminal memory usage blow up.
new vis_simulation output - 6/26/14
Changed gsm_noise_covar() so that it exploits matrix symmetry for speed.

Added a new file mpi_wrapper.py that is a template for using an mpi master/slave set up to compute the entries of a matrix.
Fixed logging on task servers so messages flow to files.
Add port variable to config file for task_servers.
   fixed ucb test still and deployment still.
Merge branch 'master' of https://github.com/carinacheng/capo
Merge branch 'master' of https://github.com/jpober/capo
Merge branch 'master' of https://github.com/mpresley42/capo
Merge branch 'master' of https://github.com/zakiali/capo
adding a file-by-file status reset function reset_observations