Issue #31: Updated patient phenotype similarity score to use simGIC score.
Issue #30: Added public methods to control patient similarity caching, and refactored paired-key caching.
Issue #26: Added boost to similarity score for matching candidate genes.
Issue #26: First attempt at incorporating candidate genes. Tweaked scoring to accomodate Exomiser 2. Candidate genes currently show up in json as multiple variants.
Merged in simGIC score branch
Improved score memoization
Issue #26: Refactored genotype representation and candidate gene handling. Code not fully tested.
Tweaked genotype UI to display only a single score per gene
Issue #30: Initial attempt at exposing script service to control patient matching cache
Issue #30: Fixed bug after smoke testing clearCache service.
Issue #21: Simplifying the patient-listener cache-clearing with methods to clear the cache of only specific patients.
Fixed up code to pass checkstyles
Removed unused CandidateGene class
Added draft of exomiser cron script
Cleaned up logging
Switched cache clearing to use ids instead of Patients, and improved cache clearing logging
Minor stylistic cleanup
Removed in-java exomiser job handling, switching over to a simple genotype cache
Finished cleanup of Exomizer-dispatch code, and fixed a bug in genotype similarity.
[cleanup] Removed trailing spaces