added gvcf usage/more uniform protocols/bugfixes
Merge pull request #172 from RoanKanninga/master

big update dna pipeline
splitted indels per sample, and merged pindel and gatk.
Merge pull request #173 from Gerbenvandervries/master

splitted indels per sample, and merged pindel and gatk.
Merge pull request #171 from mmterpstra/master

added gvcf usage/more uniform protocols/bugfixes
Added NIPT prepare protocol for datatranfer and data preperation.
Merge pull request #175 from Gerbenvandervries/master

Added NIPT prepare protocol for datatranfer and data preperation.
Added ConcordanceCheck