adding in functionality to have many config files
adding changes for config file
Merge remote-tracking branch 'origin/feature/ajw-aws-integration' into feature/ajw-aws-integration
Update README.md
readme changes
trying to pull information to make it so that we are storing fail / completed information
Merge remote-tracking branch 'origin/develop' into develop

Conflicts:
	vcf-uploader/README.md
adding more examples that conform to the file naming convension
Adding indel germline samples
Working on todo list
debug
Working on some new features, will break the code for the time being
json for inputs
working on the workflow output json summary
testing
testing
testing
testing
testing
testing