initial commit
move to ensembl dir to be tidy
add locations, fix test, add checkstyle
add tandem repeat
Merge branch 'beta' into i648
restore project files, removed in error in tragic merging accident
Switch off the data tracker for classes that won't be merged
eclipse config
change source to be a data loader task instead
point to correct data file
remove duplicate config file
Add logging to DirectDataLoader and do periodic commits.
Merge pull request #668 from rnsmith/i648

Add logging to DirectDataLoader and do periodic commits.
DirectDataLoader now supports simple objects.
Locations aren't merged so don't need to be in the data tracker.
Make Consequence a simple object.
Keep ProxyReferences for chromosomes and transcripts in map instead of full objects to save memory, only proxy is needed to set a reference to an object.
Javadoc.
Merge pull request #671 from rnsmith/i648

I648
Change store order of objects so referenced objects stored first (faster to load)