Major revision, now version 0.2
Bug: Calculation of distance between paired reads now using transcriptome index.
Changed: Output directories don't start with leading numbers any more.
Changed: RSeQC is run now in the end after all other analyses were completed.
Addition: New reference genome mm10 with spike-in
Change: variable name changes in config file
Change: variable name changes in config file
Change: variable name changes in config file