Add bedtools based version...
Correcting bedtools intersect command. Adjusting Readme to reflect bedtools implementation of RepeatSoaker
Adds a bit of defense for non zero exits

Just for fun I'll add in a bit for quicker failing, no sense in
continuing on if something isn't happy
Add quick check for bedtools & samtools in PATH

Again just a bit bored and figured why not be safe
Adds pipefailing too

Really since the samtools is piped we need to fail with there as well
Merge pull request #4 from oklasoft/add_bedtools_quick_fail

Making the script more foolproof
Fixes incorrect & silent exit 1

Was missing an extra set of () to keep that silly exit 1 from sneaking
out & getting running too often
Merge pull request #5 from oklasoft/fix_bedtools_over_zealous_exit

Fix bedtools over zealous exit
Release adjustments of the README.rst file and the RepeatSoaker script
Merging in bedtools branch
Cleaning up