Merge pull request #2 from ezekial4/dev

Should make this the release version for Chris.
Merge pull request #3 from ezekial4/dev

Final step in fixing the mess — copying the most up to date python scrip...
Merge pull request #4 from ezekial4/dev

Dev merge with master.
Merge pull request #5 from ezekial4/dev

The latest stuff.
Merge pull request #6 from ezekial4/dev

Minor changes.
Merge pull request #7 from ezekial4/dev

Dev
Merge pull request #8 from ezekial4/dev

Bug fix release.
Merge pull request #9 from ezekial4/dev

Dev
Updated the plots.
Minor bug fixes.
Merge pull request #10 from ezekial4/master

Update.