First try with pandoc to translate into rst
Fixed a few cosmetic errors by pandoc
Deleted markdown version of complete example
Link in readme changed to point to the rst version
ignore doc build
Basic documentation
Merge pull request #1 from alneberg/proper_documentation

Proper documentation tryout
Rtd theme in development as well
Added all command line arguments to documentation
Completed first version of the sphinx docs
Merge branch 'master' of github.com:alneberg/CONCOCT
No need to import rtd_theme when on rtd
Makefile to automate documentation build, and script for generating usage docs
Remove import of extension that breaks rtd
Add index page to toctree
Fixed make docs target
Moved complete example to be within sphinx source
Removed duplicated information from readme and pointed to new documentation
Fix readme typos.
Merge pull request #94 from alneberg/rst_complete_example

Reformatted the complete example into rst. Fixes #92.