Modified gitignore
Removed huge tar thing
Changed gitignore (again)
File Cleanup
Conformed PEP 8 standards
Got working with full data set
split annie.py into parts (ipr.py, sprot.py, annotation.py)
updated tests and test files
fixed tabs/spaces errors and print syntax
s/iteritems/items/ in sprot.py
Set up main test file, added tests for sprot.py, changed so unnamed genes are named after substring of dbxref
Changed getFastaInfo to assume that gene names have no spaces, added code to verify command line arguments, added code to output acceptable input format to user (type [python annie.py help] in command line).
Added whitelist functionality to ipr case. The standard whitelist is under the folder labeled config
Working with real data
Added ability to extract GO annotations in ipr, redefined less than operator and defined not equals operator for annotations, changed ipr tests to reflect GO annotation functionality
Files close now
Get ipr annotation in list of annotations for ipr scan
Minor fix in pathname
Dbxrefs are uppercased for NCBI
Added code comments/documentation and did some file cleanup with the sample data