merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 1418 (IFormatReader: Remove deprecated methods)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 1425 (Convert tolerance to NonNegativeInt to NonNegativeFloat)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 1435 (Ordered MapPairs implementation)
merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1366 ctrueden 'Miscellaneous cleanup' (user: ctrueden)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1432 melissalinkert 'Metamorph: fix description delimiter to account for XML sanitization' (user: melissalinkert)
  # PR 1420 qidane 'Updating samples and adding units samples' (user: qidane)
  # PR 1383 LeeKamentsky 'Fix im3 metadata' (user: LeeKamentsky)
  # PR 1423 melissalinkert 'TIFF: attempt to correct incorrectly stored StripByteCounts values' (user: melissalinkert)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1431 rleigh-dundee 'Specification: Add XML catalogues for released schemas' (user: rleigh-dundee)
  # PR 1422 melissalinkert 'Zeiss TIFF: fix used file list when expected files are missing' (user: melissalinkert)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1428 rleigh-dundee 'C++: Incremental metadata processing work' (user: rleigh-dundee)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (user: ctrueden)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1362 melissalinkert 'Make FormatReader's RandomAccessInputStream transient' (user: melissalinkert)
  # PR 1421 jburel 'Units mock' (user: jburel)
  # PR 1433 melissalinkert 'Initial version of I2I reader' (user: melissalinkert)
  # PR 1434 rleigh-dundee 'cpp: cmake: RegexChecks: Improve include usage for portability' (user: rleigh-dundee)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1430 sbesson 'Matlab units metadata' (user: sbesson)
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
Updating e88645d..80e0ffe
Previously merged:
  # PR 1427 rleigh-dundee 'C++: Path handling and installation location introspection'
  # PR 1429 qidane 'Change working distance back to UNITS.MICROM'
  # PR 1419 sbesson 'Flake8 Bio-Formats Python files'
  # PR 1424 melissalinkert 'DICOM: fix dimension population for multi-series filesets'
  # PR 1385 rleigh-dundee 'C++: Add TIFF reader'

Merged PRs:
  # PR 1418 rleigh-dundee 'IFormatReader: Remove deprecated methods'
  # PR 1425 jburel 'Convert tolerance to NonNegativeInt to NonNegativeFloat'
  # PR 1435 joshmoore 'Ordered MapPairs implementation'

Generated by OME-5.1-breaking-push#203 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/203/)