my brach
Some small merging
added shell script to build and run the moose.
Some more merging.

Merge branch 'dilawar' of github.com:dilawar/moose into dilawar

Conflicts:
	CMakeLists.txt
	basecode/CMakeLists.txt
	biophysics/CMakeLists.txt
	external/debug/CMakeLists.txt
	external/debug/assert.hpp
	external/debug/print_function.cc
	shell/CMakeLists.txt
Fixed noise generated in cmake.