change repeatmodeler paths.  note filtered versions not added into xml for now.
fix up filterScore to work on floats
bla
add noBase option to compare to only do interval comparisons and skip the crappy base comparison loop which is 1000x slower
fix ever changing paths
Merge branch 'development' of github.com:glennhickey/teHmm into development
add fragmented stats option to compare
fix bug in last change to compare.  update polyn paths
fix up fitStateNames to work with interval confusion matrix.  looks like better idea all around so far
Merge remote-tracking branch 'origin/development'