Added log-output for size of codeatposition.
Added log-output for size of codeatposition.
Make GtBentsedgresources *bsr an object and satisfy splint.
Replaced special characters in sample queries.
Satisfy splint.
Merge branch 'sk' of https://github.com/stefan-kurtz/genometools into sk
Merge pull request #137 from gordon/windows

build Windows distribution correctly (.exe / .zip)
Merge pull request #138 from stefan-kurtz/sk

Sk
Updated mksainseq.rb to GtUword and Gtword
Integrate init of rsi into bendsegde_new
Removed script to evaluated running time of suffix array constructions.
Added function to read file contents into heap.
Merge pull request #139 from stefan-kurtz/sk

Added function to read file content into RAM without using mmap
Replaced ulong/long by Gt[US]sainindextype.
Optimed the generation of the program code for different cases.
Determine unique symbol only when necessary.
Added line stating that file is generated.
Use sequential readint where possible.
Added parser for DNA sequences to gt dev sain.
Introduce BareEncseq class with constructor (=parser).