nanshe/nanshe_learner.py: Cleaned up how module name is determined.
nanshe/nanshe_learner.py: Added support for redirecting the stdout and stderr of each block subprocess.
nanshe/nanshe_learner.py: Only tries to import the drmaa python module if it is intended to be use. If drmaa is installed or if libdrmaa.so cannot be found (requires the environmental variable DRMAA_LIBRARY_PATH be set to libdrmaa.so), the error is logged and the appropriate exception (ImportError or RuntimeError) is raised.
nanshe/nanshe_learner.py: Makes JobTemplate instances for deployment using DRMAA.
nanshe/nanshe_learner.py: An adaption of the subprocess-based job pool for DRMAA.
tests/test_nanshe_learner.py: Provided support for drmaa tests in TestNansheLearner.setup.
tests/test_nanshe_learner.py: Added a test for generate_neurons_blocks that uses DRMAA.
tests/test_nanshe_learner.py: Added a test for generate_neurons_io_handler that uses DRMAA.
tests/test_nanshe_learner.py: Added a test for main that uses DRMAA.
advanced_image_processing: Renamed the function region_properties to region_properties_scikit_image to specify what library it is using. Added a new version of the function region_properties, which currently simply calls region_properties_scikit_image.
advanced_image_processing: Added the function region_properties_vigra to supply an interface to vigra that will format the results in the same way as region_properties_scikit_image.
advanced_image_processing: Changed region_properties to call region_properties_vigra instead of region_properties_scikit_image.
advanced_image_processing: Changed generate_local_maxima_vigra so that it will used vigra.analysis.extendedLocalMaxima3D if the data is 3D and will resort to vigra.analysis.extendedLocalMaxima if the data is 2D. If the dimensionality is neither, it will fail an assertion.
expanded_numpy: Added the function add_singleton_op, which will perform a dimension reducing operation (numpy.max, numpy.min, etc.) to an array and add a singleton dimension in the removed dimensions place.
advanced_image_processing: Changed all max projections being stored so that they keep the same dimensionality as the arrays they came from.
nanshe_learner: Changed all max and mean projections being stored so that they keep the same dimensionality as the arrays they came from.
nanshe/advanced_image_processing.py: Added logging messages for entering and exiting the watershed segmentation portion of wavelet_denoising.
synthetic_data: Added a doctest to generate_hypersphere_masks for the 3D case.
synthetic_data: Added some doctests to generate_gaussian_images for the 3D case.
synthetic_data: Added some doctests to generate_random_bound_points for the 3D case.
test_advanced_image_processing: Added a test for extract_f0 using 3D data.