removed hashdist -v flag because it breaks cygwin
fixed the stupid link file
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Merge pull request #34 from erdc-cm/cygwin_hack

fixed the stupid link file
updated  the documentation
addex doxygen config file and windows batch file for sphinx
added sphinx source files
updated Makefile to allow more granularity in the build, primarily for buildslave steps
split up imports to make it easier to diagnose import problems
fixed 'make doc'
fixed  the mainpage link generated by doxygen to point back to proteus mainpage
fixed  the sphinx docs to use the correct templates  and icons
removed ref to missing google image
fixed some links
added corps castle to _static
switch default (developer mode) documentation build to use secure mathjax cdn
tweaked running command in homepage to reflect new directory structure
updated installation instructions in README
fixed doc on ShockCapturing parameter
Merge branch 'master' of github.com:erdc-cm/proteus
updated cygwin config to  use the right path for  blas and lapack