Merge branch 'master' of https://github.com/Blahah/transrate into inline
make command-line output more readable
add multiple assembly processing, bump patch version
fix crash when reference not provided
re-enable NX distribution, disable basic_stats threading

now that orf_length is inline C, basic_stats is extremely fast,
so I've re-enabled NX distribution because most people will
expect to see it, and removed the threading as it is incompatible
with NX calculation. TODO: tidy up the thread disabling.
bump minor version
do not allow negative padding
do not allow negative padding
add outfile option
Merge branch 'master' of github.com:Blahah/transrate

Conflicts:
	bin/transrate
Merge branch 'inline' of github.com:cboursnell/transrate into cboursnell-inline
Merge branch 'cboursnell-inline'
Merge pull request #26 from cboursnell/master

Remove debugging statements
Merge branch 'chimera' of github.com:cboursnell/transrate into cboursnell-chimera

Conflicts:
	bin/transrate
Merge branch 'cboursnell-chimera'
Merge branch 'master' of github.com:Blahah/transrate
Delete .#transrater.rb
add emacs artefacts to gitignore
Delete test_test.rb~
Create .travis.yml