Working on the use of artifact and resource download file from S3
Now pulling in vcf uploader as pom dependency from 1.1.0 release on artifactory
Add info on running in test mode
Update README.md
Updating the workflow name to be more obvious
Merge remote-tracking branch 'origin/release/1.0.0' into release/1.0.0
Tweakign the workflow name
Temporary quick and dirty decider to run the 50, not finished yet
Merge branch 'dev' into release/1.0.0

Conflicts:
	README.md
	src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java
	workflow/bin/gnos_upload_vcf.pl
	workflow/scripts/download_ref.pl
A simple change to include an uploadPemFile param since the download and upload repositories might be different
Working on simple ini file creation person script for the 58 donors
Working on script to make ini files
Bug
rename var
skip first line
escape dash
escape dash
Fixed bug
timing
Merge branch 'release/1.0.0'