add support for bower dependencies

	new file:   .bowerrc
	modified:   .gitignore
	new file:   bower.json
	modified:   web/tmpl/SynMap.tmpl
	modified:   web/tmpl/UserGraph.tmpl
refactor and rename config variable in SynFind

Use the _CONFIG_PATH member rather than constructing the configuration
path.

	modified:   web/SynFind_new.pl
refactor and rename config variable in SynFind

Use the _CONFIG_PATH member rather than constructing the configuration
path.

	modified:   web/GenomeInfo.pl
refactor run_dotplot to use web init

	modified:   web/run_dotplot.pl
remove old version of SynMap

	deleted:    SynMap_old.pl
	deleted:    run_dotplot_old.pl
	deleted:    tmpl/SynMap_old.tmpl
add request timeout for run_dotplot

	modified:   SynMap.pl
Rename variable to better name

	modified:   scripts/find_SNPs.pl
	modified:   scripts/qteller.pl
	modified:   web/CoGeBlast_new.pl
	modified:   web/Jobs.pl
	modified:   web/SynFind_new.pl
	modified:   web/SynMap.pl
update waiting message in GenomeInfo

Change waiting message to better reflect the time required in running
the task to generate the output files.

	modified:   web/tmpl/GenomeInfo.tmpl
guard against failure in GenomeInfo

Guard against gc stats failing so the page can still be rendered.

	modified:   web/GenomeInfo.pl
fix title link

Title now shows click icon on hover and navigates to the
genomevolution.org wiki.

    modified:   web/tmpl/header.tmpl
fix OrganismView

Remove dead template variable no longer in the template file.

	modified:   OrganismView.pl
add optional export support to Web.pm

	modified:   modules/Accessory/lib/CoGe/Accessory/Web.pm
add support to set default config options

Options can be changed in the config by passing a hash of options to
set_defaults.

	modified:   lib/CoGe/Accessory/Web.pm
add url building support

Add new function url_for to construct URL.

	modified:   modules/Accessory/lib/CoGe/Accessory/Web.pm
	new file:   modules/Accessory/t/url.t
refactor get_dotplot

Refactor get_dotplot to fix URL construction and fix bug with URL
not being constructed properly.

	modified:   web/SynMap.pl
improve dotplot URL building

Refactor dotplot.pl to construct URL using url_for. fixes an issues
where the URL is not constructed correctly when the config doesn't have
a base url.

	modified:   web/bin/dotplot.pl
	modified:   web/tmpl/widgets/Dotplot.tmpl
fix bug to check chromosome for being empty

	modified:   web/GenomeInfo.pl