edited includes and makefile to only run without cpi, doesn't require g++ >= 4.5
fixed saving issue, don't know why this ever worked ever
added long int handling, but have floating point error on cluster
more plotting
Merge branch 'master' of https://github.com/glinka/prefAttachModel into nocpi
merge conflict resolved
trying to merge again
not using parse_longint, just casting from float
Merge branch 'nocpi' of https://github.com/glinka/prefAttachModel into nocpi
removed unused graphData array, more importantly fixed sum < p issue, in which p = 0 and the loop never executes
Merge branch 'nocpi' of https://github.com/glinka/prefAttachModel into nocpi
now fixed sum < p?
fixed saving errors, which inexplicably didn't show up previously
finalized plotOutput command 'v2' to make figures for briefing
actually finalized balazs briefing. the commit contained herein ought to contain that which was sent to Balazs. in lawyerspeak.
separated plotting routines into different functions, added analytically-derived data comparison
many new plotting routines that you will probably not know how to use in the future. however, did add SDE integrator to compare to analytical results given in paper
fixed a huge memory leak, now runs cleanly. also added various density outputs (simple edge and self-loop)
slight changes to report and plotting routines
this branch has been used mainly for balazs-related investigation without cpi. so the name isn't wrong, but it's not particularly helpful either