Adding readset
Trying to get read set to work
Looks like very basic readset read/write is working
Adding code for reading BAM files
Basic BAM reading with ranges is now working
Adding a ReadSet in the web service. Still need to figure out how this web service works
Having null pointer exception problem
Seems to be working now
At this point I have basic writeback of SAM data working
SAM writeback is working, need paging still
Added streaming return of SAM so results come back instantly and use up very little memory on the server. Before the result had to be created in memory before returning.
Working on BAM
Now have BAM writeback working.
Just some docs editing
Removed some logging
Not sure where I left off with this
Gets us closer to correctly specified generic methods
Working generics on our Java code, but NOT for Swagger annotations which is why the GroupResource is so ugly.

Also, tried @JsonIgnore, @XmlTransient, but nothing seems to exclude properties that we don't want to get into JSON form. This is despite the code that seems to handle it in Swagger. POST on Group works, POST on User mostly works (but you need to trim inappropriate fields).
Fix for constructor of User
Working on update and delete. Both are working generically now (at least when testing the group resource) but I'm not really happy with the implementation of either.