Making branch for 2.3.0 release.
Initialized merge tracking via "svnmerge" with revisions "1-4254" from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk
Removed merge tracking for "svnmerge" for 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/branches/openbabel-2-2-x
Blocked revisions 2704-2706,2798,2809-2812,2819,2829,2837,2847,2867,2869,2876,2884,2896-2900,2915,2918,2920,2922,2924,2936-2945,2947-2952,2968,2976-2977,2983,2985,2991,2997-2999,3010,3026,3032,3034,3108,3116,3145-3147,3151,3153-3194,3196-3220,3222-3334,3347-3348,3350-3359,3361-3365,3368,3372-3380,3382-3442,3446-3447,3449-3457,3459-3469,3471-3474,3476-3488,3490-3491,3494-3495,3498-3502,3504-3506,3508-3670,3672-3683,3685-3726,3731,3738-4254 via svnmerge
Merged revisions 4256-4258,4262-4270 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4256 | ghutchis | 2010-10-24 12:29:21 -0400 (Sun, 24 Oct 2010) | 2 lines
  
  First pass at "polish" on documentation.
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  r4257 | jbrefort | 2010-10-24 13:42:06 -0400 (Sun, 24 Oct 2010) | 2 lines
  
  Fixed space group 104.
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  r4258 | ghutchis | 2010-10-24 16:06:42 -0400 (Sun, 24 Oct 2010) | 2 lines
  
  More documentation updates.
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  r4262 | timvdm | 2010-10-24 18:03:23 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Doc updates...
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  r4263 | timvdm | 2010-10-24 18:06:12 -0400 (Sun, 24 Oct 2010) | 1 line
  
  More docs updates...
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  r4264 | timvdm | 2010-10-24 18:14:51 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Docs...
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  r4265 | timvdm | 2010-10-24 18:23:57 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Docs...
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  r4266 | timvdm | 2010-10-24 18:55:09 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Docs...
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  r4267 | timvdm | 2010-10-24 18:58:08 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Docs...
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  r4268 | timvdm | 2010-10-24 19:10:18 -0400 (Sun, 24 Oct 2010) | 1 line
  
  Docs...
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  r4269 | ghutchis | 2010-10-24 19:24:34 -0400 (Sun, 24 Oct 2010) | 2 lines
  
  Exclude snprintf code (which is only used if no system snprintf is available).
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  r4270 | ghutchis | 2010-10-24 22:17:51 -0400 (Sun, 24 Oct 2010) | 2 lines
  
  Fix compile error with #ifndef #endif pair.
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Only link QTPIE, QEQ, and conformer plugin if Eigen2 is available.
Add ignore for user guide.
Fixes for Perl bindings.
Merged revisions 4276-4279 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4276 | timvdm | 2010-10-25 16:55:30 -0400 (Mon, 25 Oct 2010) | 1 line
  
  plugin.*: Some changes for static plugins and MinGW.
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  r4277 | ghutchis | 2010-10-25 23:06:15 -0400 (Mon, 25 Oct 2010) | 3 lines
  
  Fix from Kasper Thofte -- multiple disconnected components are placed at slightly different 3D geometries.
  This prevents issues with running force fields (e.g., two atoms at 0,0,0).
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  r4278 | ghutchis | 2010-10-26 00:38:52 -0400 (Tue, 26 Oct 2010) | 2 lines
  
  Handle static compiles when libz is not found.
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  r4279 | ghutchis | 2010-10-26 00:39:14 -0400 (Tue, 26 Oct 2010) | 2 lines
  
  Handle static compiles on Mac (where -static is not used).
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Merged revisions 4281 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4281 | baoilleach | 2010-10-26 07:37:36 -0400 (Tue, 26 Oct 2010) | 1 line
  
  Update docs and Python binding version.
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Merged revisions 4284-4297,4299-4310 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4284 | baoilleach | 2010-10-28 11:03:19 -0400 (Thu, 28 Oct 2010) | 1 line
  
  Commit of ancillary files to create the Python distribution(s) on Windows.
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  r4285 | annulen | 2010-10-29 09:46:48 -0400 (Fri, 29 Oct 2010) | 6 lines
  
  * scripts/CMakeLists.txt: added dependency 'openbabel' to target
  '_openbabel' (Python bindings)
  	
  On non-Windows platfroms Python module is linked by custom script
  which is not aware of target dependencies. This change fixes parallel
  build
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  r4286 | annulen | 2010-10-29 12:38:19 -0400 (Fri, 29 Oct 2010) | 2 lines
  
  * scripts/CMakeLists.txt: fixed behavior of build system if some of
  JNI dependencies were not found
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  r4287 | timvdm | 2010-10-30 10:31:52 -0400 (Sat, 30 Oct 2010) | 1 line
  
  XML and InChI are now turned off for static builds. These will be enabled again once the win32 linking issues are resolved. Options are: WITH_STATIC_LIBXML and WITH_STATIC_INCHI
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  r4288 | mr_grieves | 2010-11-03 13:22:27 -0400 (Wed, 03 Nov 2010) | 1 line
  
  Allow GULP format reader to handle single point output, fix url.
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  r4289 | hansdewinter | 2010-11-03 18:50:13 -0400 (Wed, 03 Nov 2010) | 1 line
  
  Modified StripSalts() method to fix bug when followed by SmartsPattern::Match() method
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  r4290 | mr_grieves | 2010-11-04 08:14:05 -0400 (Thu, 04 Nov 2010) | 1 line
  
  Extract energies from GULP single point output.
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  r4291 | baoilleach | 2010-11-04 08:17:12 -0400 (Thu, 04 Nov 2010) | 1 line
  
  Add Python bindings for new canonical labelling, isomorphism, OBAlign and OBQuery classes.
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  r4292 | chrismorl | 2010-11-05 18:51:22 -0400 (Fri, 05 Nov 2010) | 3 lines
  
  Fix for bug 3102719: babel not reading the option parameters specifying the number of columns and rows. But it requires the use of --rows and --cols instead of xr and -xc (and --px instead of -xp). With babel the options are shared with other formats, which causes conflicts when they take different numbers of parameters (as here).  obabel, because it does not need to be told the number of parameters, works with both the old and new styles. 
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  r4293 | chrismorl | 2010-11-06 16:31:20 -0400 (Sat, 06 Nov 2010) | 1 line
  
  Updated MACCS.txt file. Fixes bug reported by Andrew Dalke on mailing list.
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  r4294 | chrismorl | 2010-11-06 17:33:24 -0400 (Sat, 06 Nov 2010) | 1 line
  
  obfit.cpp: catch some faulty input before seg fault, as reported by Jean-Paul Ebejer.
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  r4295 | chrismorl | 2010-11-07 04:22:07 -0500 (Sun, 07 Nov 2010) | 1 line
  
  Change error message to avoid compiler warning.
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  r4296 | chrismorl | 2010-11-09 15:14:56 -0500 (Tue, 09 Nov 2010) | 1 line
  
  Output number of bits and datafile version(if applicable) on second line of fingerprint descriptions.
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  r4297 | chrismorl | 2010-11-10 05:17:23 -0500 (Wed, 10 Nov 2010) | 1 line
  
  For patternFP fingerprints display the number of bits and version in Description() only if the fingerprint has already been used, to avoid unnecessary parsing of the datafiles.
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  r4299 | ghutchis | 2010-11-11 11:37:51 -0500 (Thu, 11 Nov 2010) | 2 lines
  
  Added a port of EEM methods from OBSpectrophore.
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  r4300 | ghutchis | 2010-11-11 15:02:48 -0500 (Thu, 11 Nov 2010) | 2 lines
  
  Add missing EEM method.
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  r4301 | baoilleach | 2010-11-12 05:26:57 -0500 (Fri, 12 Nov 2010) | 1 line
  
  3D Builder test case from Martin Guetlin. PR#3107218. Works fine for me under MSVC, but maybe there's a problem on Linux.
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  r4302 | hansdewinter | 2010-11-12 07:47:28 -0500 (Fri, 12 Nov 2010) | 1 line
  
  Made the test for Spectrophores a little stricter (Thx to Andrew Dalke)
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  r4303 | baoilleach | 2010-11-15 17:12:06 -0500 (Mon, 15 Nov 2010) | 1 line
  
  Partial fix to bug reported on openbabel-discuss by Miguel Olazabal. Formats that require stereochemical information on writing should call PerceiveStereo, rather than relying on it already being perceived. The problem is exposed when converting formats that do not require stereo perception to one that does, e.g. xyz to SMILES. This needs further testing to ensure that it working correctly. For example, xyz --> CML and xyz --> InChI still need looking at (and presumably MOL2 will also need some work...).
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  r4304 | baoilleach | 2010-11-16 09:42:13 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Additional partial fixes for reported problem with chirality. These fixes target OBMol::AddHydrogens() and OBBuilder::Build(). The test cases now pass, but I need to add more tests.
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  r4305 | baoilleach | 2010-11-16 10:17:56 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Add XYZ test cases for chirality. No new failures here.
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  r4306 | baoilleach | 2010-11-16 12:03:11 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Final part of chirality bug fix. The shuffle test now passes. The problem is that EndModify wipes all flags, so it's necessary to keep restoring the chirality flag or all the carefully conserved stereo data will be lost.
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  r4307 | baoilleach | 2010-11-16 12:08:11 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Revert debug code mistakenly committed in r4305.
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  r4308 | cryosuk | 2010-11-16 22:08:45 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Removed all of the extra semicolons from the static macros - compiler warnings.
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  r4309 | cryosuk | 2010-11-16 22:11:13 -0500 (Tue, 16 Nov 2010) | 1 line
  
  Added back in missing semicolon - got carried away at the end.
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  r4310 | baoilleach | 2010-11-17 04:50:10 -0500 (Wed, 17 Nov 2010) | 1 line
  
  scripts/openbabel-python.i: I recently added support for align.h. This is dependent on Eigen and needed another "if" statement added to the interface.
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Merged revisions 4312-4356 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4312 | baoilleach | 2010-11-18 06:41:31 -0500 (Thu, 18 Nov 2010) | 7 lines
  
  test/testbindings.py, test/CMakeLists.txt, cmake/modules/UsePythonTest.cmake:
  	Ensure that the environment variables LD_LIBRARY_PATH, BABEL_*DIR are
  	set by CMake before running the Python binding tests. This involved
  	editing	the UsePythonTest CMake module to allow these values to be
  	passed. I also made sure that these tests can run directly.
  	TODO: Sort this all out on Windows.
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  r4313 | baoilleach | 2010-11-18 06:52:02 -0500 (Thu, 18 Nov 2010) | 1 line
  
  Update the variables for the Python tests too
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  r4314 | baoilleach | 2010-11-18 10:03:04 -0500 (Thu, 18 Nov 2010) | 1 line
  
  More tweaks to the Python binding tests. This time to fix things on Windows. Hopefully everything should now pass on both Linux and Windows.
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  r4315 | cryosuk | 2010-11-21 13:19:54 -0500 (Sun, 21 Nov 2010) | 1 line
  
  Project name for CTest must match project name in CMakeLists - Visual Studio.
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  r4316 | cryosuk | 2010-11-22 00:51:45 -0500 (Mon, 22 Nov 2010) | 1 line
  
  Corrected time to match that of the dashboard.
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  r4317 | cryosuk | 2010-11-22 01:08:43 -0500 (Mon, 22 Nov 2010) | 1 line
  
  Finish moving CMake config file location, can use find_package(OpenBabel2).
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  r4318 | ghutchis | 2010-11-22 19:38:40 -0500 (Mon, 22 Nov 2010) | 3 lines
  
  Always execute StripSalts -- may return false for one-component molecules,
  but that's usually what the user wants.
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  r4319 | chrismorl | 2010-11-23 12:31:00 -0500 (Tue, 23 Nov 2010) | 1 line
  
  Include the formal charge in the formula, and correct the spacing in the spaced formula.
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  r4320 | baoilleach | 2010-11-24 04:23:38 -0500 (Wed, 24 Nov 2010) | 2 lines
  
  mol.cpp: Fix for commit by Chris to enable Linux compilation. Something to do with temporary variables.
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  r4321 | baoilleach | 2010-11-24 06:40:06 -0500 (Wed, 24 Nov 2010) | 5 lines
  
  Fixes and test files for Steffen Neumann's PR#3107834 and PR#3116415 and his email to openbabel-devel entitled "58 failures among 28 Mio conversions smi -> inchi".
  
  data/atomtyp.txt: 5-coordinate Sb and As were typed as sp3
  src/stereo/perception.cpp: Check that a potential cis/trans bond does not involve an atom with more than 3 neighbours.
  test/*: Include a reduced version of Steffen's test cases. Minor mod to file names to enable .smi files as well as .sdf in test cases.
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  r4322 | chrismorl | 2010-11-25 08:57:30 -0500 (Thu, 25 Nov 2010) | 1 line
  
  Fix #3117349 - crash when unattached alias expanded.
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  r4323 | baoilleach | 2010-11-25 14:35:08 -0500 (Thu, 25 Nov 2010) | 1 line
  
  scripts/CMakeLists.txt: Partial revert of r4286. JNI_FOUND is not defined by a CMake module.
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  r4324 | chrismorl | 2010-11-28 06:29:53 -0500 (Sun, 28 Nov 2010) | 1 line
  
  In the -s option, add an automatic call to AddHydrogens() on the molecule if #1 is detected in SMARTS. This fixes an issue raised by Fredrik Wallner on the OpenBabel-Discuss mailing list. '[H]' is already detected in OBSmartsPattern::SMARTSParser, but extending to #1 caused problems with atom typing. Rather than dig around in the pre-history, it is safer, although less general, to do the mod in the -s option. 
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  r4325 | baoilleach | 2010-11-29 07:32:50 -0500 (Mon, 29 Nov 2010) | 3 lines
  
  data/atomtyp.txt: Some more tweaks to handle different valencies.
  src/stereo/perception.cpp: Defensive programming to prevent atoms with 5 connections being considered as stereogenic.
  test/inchi/*: Add Steffen's new test cases.
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  r4326 | baoilleach | 2010-11-29 07:54:02 -0500 (Mon, 29 Nov 2010) | 1 line
  
  test/files/formularesults.txt: Following Chris's edits, molecular formula now includes charge, so I've updated 5 or so entries in the formulatest. Should pass now.
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  r4327 | baoilleach | 2010-11-29 09:29:21 -0500 (Mon, 29 Nov 2010) | 1 line
  
  scripts/openbabel-java.i: Get rid of warnings when building the Java bindings on Windows.
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  r4328 | baoilleach | 2010-11-29 09:41:22 -0500 (Mon, 29 Nov 2010) | 1 line
  
  scripts/CMakeLists.txt: Fix problem when compiling javac files on Windows if spaces in path to OpenBabel src.
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  r4329 | baoilleach | 2010-11-30 16:38:47 -0500 (Tue, 30 Nov 2010) | 1 line
  
  scripts/CMakeLists.txt: Finally I have gotten the csharp bindings to work again. The probably is that I'm now using a 64-bit OS, and so it's necessary to specify /platform:x86 both when *we* are creating the OBDotNet.dll and when users are compiling against this. There is more work to be done on the build instructions and so forth but the major techinical problem is solved.
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  r4330 | baoilleach | 2010-12-01 08:20:19 -0500 (Wed, 01 Dec 2010) | 3 lines
  
  scripts/CMakeLists.txt: Change DLL back to openbabel_csharp.dll
  scripts/openbabel-csharp.i: Change DLL back to openbabel_csharp.dll, and get rid of warnings.
  windows-vc2008/Distribution/OBDotNetAssemblyInfo.cs: Bump version number to 0.4.
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  r4331 | baoilleach | 2010-12-07 05:21:29 -0500 (Tue, 07 Dec 2010) | 1 line
  
  Python bindings: Add support for OBStereoFacade. (TODO: look at other stereo classes)
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  r4332 | baoilleach | 2010-12-07 10:40:10 -0500 (Tue, 07 Dec 2010) | 1 line
  
  stereo/perception.cpp: Tighten up the perception of tet stereo centers in 2D formats. Seems to be working very well now.
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  r4333 | chrismorl | 2010-12-07 12:46:43 -0500 (Tue, 07 Dec 2010) | 1 line
  
  Prevent addition of implicit hydrogen to metal atoms (with NoHForced()==true) when writing InChI.
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  r4334 | chrismorl | 2010-12-07 16:53:20 -0500 (Tue, 07 Dec 2010) | 1 line
  
  Reverse the direction of wedge and hash bonds in OBDepict, bug #3131581.
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  r4335 | baoilleach | 2010-12-11 14:42:57 -0500 (Sat, 11 Dec 2010) | 1 line
  
  src/stereo/perception.cpp (TetrahedralFrom2D): Change the handling of stereo bonds that connect two chiral centers. The most common convention (and perhaps the only one used nowadays) is the "tip only" convention. I've changed the code to use this, but retained the original code which followed the "both ends" convention in case we want to add an option to enable this in future.
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  r4336 | baoilleach | 2010-12-11 16:47:27 -0500 (Sat, 11 Dec 2010) | 1 line
  
  srsrc/stereo/perception.cpp (TetrahedralFrom2D): Minor addition or correction to previous commit. Seems to work very well now.
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  r4337 | baoilleach | 2010-12-13 05:54:04 -0500 (Mon, 13 Dec 2010) | 1 line
  
  test/stereoperceptiontest.cpp: Commenting out the two tests that use inverted hash or wedge bonds. These are no longer supported. (The code is still there to handle them, though, if necessary to bring back)
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  r4338 | chrismorl | 2010-12-13 09:34:42 -0500 (Mon, 13 Dec 2010) | 4 lines
  
  Minor mods and a bug fix for cmlformat
  Normal output (not formula), even with no bonds
  Read in ZPE to OBMol::_energy
  Do not read in more rot consts than are available
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  r4339 | ghutchis | 2010-12-13 12:40:28 -0500 (Mon, 13 Dec 2010) | 2 lines
  
  Ignore "guide" subdirectory.
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  r4340 | ghutchis | 2010-12-15 16:44:02 -0500 (Wed, 15 Dec 2010) | 2 lines
  
  Incorporated MMFF94 changes from Paolo.
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  r4341 | ghutchis | 2010-12-15 16:45:57 -0500 (Wed, 15 Dec 2010) | 2 lines
  
  Patches from Fedora packaging.
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  r4342 | baoilleach | 2010-12-20 11:47:33 -0500 (Mon, 20 Dec 2010) | 1 line
  
  src/mcdlutil.cpp: Apply edits by Sergey that enable cis/trans stereo when generating coords.
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  r4343 | chrismorl | 2010-12-22 06:32:52 -0500 (Wed, 22 Dec 2010) | 1 line
  
  Stop  direct SMILES input containing '*' in obabel on Windows being seen as a wildcard 
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  r4344 | chrismorl | 2010-12-22 10:15:08 -0500 (Wed, 22 Dec 2010) | 2 lines
  
  Fix problem with 0xout when given untrimmed strings. 
  Make OBConversion::SetOptions("") clear all the options.
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  r4345 | chrismorl | 2010-12-22 10:22:15 -0500 (Wed, 22 Dec 2010) | 2 lines
  
  Make mdlformat and OBDepict read and write * atoms with atomclass as an RGroup. These are already read and written in SMILES as, e.g. [*:2] . See
  http://blueobelisk.shapado.com/questions/how-r-group-atoms-should-be-represented-in-smiles
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  r4346 | baoilleach | 2010-12-26 08:34:32 -0500 (Sun, 26 Dec 2010) | 1 line
  
  src/formats/mdlformat.cpp: Correctly write atom parity flag in MDL formats where Tet Center involves H or implicit ref. (Thanks to heads up from WDI)
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  r4347 | baoilleach | 2010-12-30 15:55:40 -0500 (Thu, 30 Dec 2010) | 1 line
  
  scripts/openbabel-java.i: Re-enable vector::size() for Java bindings. This shouldn't have been disabled.
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  r4348 | baoilleach | 2011-01-04 05:11:49 -0500 (Tue, 04 Jan 2011) | 1 line
  
  INSTALL: Minor mods to instructions following comment by Scott Brozell on openbabel-discuss.
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  r4349 | chrismorl | 2011-01-04 08:39:42 -0500 (Tue, 04 Jan 2011) | 3 lines
  
  When reading Gaussian logfiles: put some metadata into OBCommentData;
  make g98 read rotational constants; and read only as many as there are.
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  r4350 | jiahao | 2011-01-07 02:23:38 -0500 (Fri, 07 Jan 2011) | 7 lines
  
  Added environment setting commands to pybel build and install commands.
  
  This fix passes CFLAGS set in CMake to setup.py. setup.py is also passed "-I${EIGEN2_INCLUDE_DIR}", which will otherwise not compile if the Eigen2 headers are not placed in a default location.
  
  This fix uses the export environment setting command, which will not work if the shell does not support this ( sh or bash do, but not csh). A better fix is probably in order
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  r4351 | baoilleach | 2011-01-07 11:15:31 -0500 (Fri, 07 Jan 2011) | 1 line
  
  Temporary revert of r4350 to allow work on DESTDIR to proceed.
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  r4352 | baoilleach | 2011-01-07 11:50:27 -0500 (Fri, 07 Jan 2011) | 1 line
  
  Partial apply of John Bollinger's patch for Python DESTDIR support
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  r4353 | baoilleach | 2011-01-08 07:56:29 -0500 (Sat, 08 Jan 2011) | 1 line
  
  Commit of remaining part of John Bollinger's patch for Python DESTDIR support
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  r4354 | baoilleach | 2011-01-08 09:52:28 -0500 (Sat, 08 Jan 2011) | 1 line
  
  Apply John Bollinger's patch for Perl DESTDIR support
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  r4355 | baoilleach | 2011-01-08 14:53:29 -0500 (Sat, 08 Jan 2011) | 3 lines
  
  scripts/ruby/extconf.rb: Minor correction to syntax of case statement (caused error for me with Ruby 1.9)
  scripts/CMakeLists.txt: Support for DESTDIR in Ruby bindings.
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  r4356 | baoilleach | 2011-01-09 08:28:38 -0500 (Sun, 09 Jan 2011) | 2 lines
  
  scripts/CMakeLists.txt: Apply patch from Jiahao Chen (after some mods) to fix PR#3153016 - Python bindings were not being passed -IEIGEN2_INCLUDE_DIR.
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Merge revisions 4375..4382 into the 2.3 branch:

- Fix some typos.
- Fix parallel building for the perl-bindings target.
- Add switch to pass INSTALLDIRS=vendor to Makefile.PL of the perl bindings.
Merge trunk revision 4384 into 2.3 branch:

doc/babel.1 is now also the manual page for obabel. Information about the
differences between these tools have been added to doc/babel.1.

doc/obabel.1 is a symlink to babel.1.

Added doc/OBGUI.1 as a preliminary manual page for the GUI.
Blocked revisions 4375-4382 via svnmerge

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  r4375 | baoilleach | 2011-02-08 17:06:56 -0500 (Tue, 08 Feb 2011) | 1 line
  
  *format.cpp: Update Description() strings of several formats to improve online documentation. (Final edit)
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  r4376 | dleidert | 2011-02-09 19:09:54 -0500 (Wed, 09 Feb 2011) | 4 lines
  
  * scripts/CMakeLists.txt: Added openbabel as dependency for perl bindings
    target to fix parallel building.
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  r4377 | dleidert | 2011-02-09 19:28:48 -0500 (Wed, 09 Feb 2011) | 5 lines
  
  * scripts/CMakeLists.txt: Add support for passing INSTALLDIRS=vendor to
    Makefile.PL for all packagers. The switch is called OBPERL_INSTALLDIRS
    in accordance to OBPERL_PREFIX.
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  r4378 | dleidert | 2011-02-09 19:56:27 -0500 (Wed, 09 Feb 2011) | 3 lines
  
  * doc/obprobe.1: Change hyphen into minus sign.
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  r4379 | dleidert | 2011-02-09 19:57:02 -0500 (Wed, 09 Feb 2011) | 3 lines
  
  * tools/obspectrophore.cpp: Fix typo.
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  r4380 | dleidert | 2011-02-09 19:59:53 -0500 (Wed, 09 Feb 2011) | 3 lines
  
  * include/openbabel/inchiformat.h: Fix typo.
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  r4381 | dleidert | 2011-02-09 20:00:39 -0500 (Wed, 09 Feb 2011) | 3 lines
  
  * include/openbabel/stereo/tetranonplanar.h: Fix another typo.
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  r4382 | dleidert | 2011-02-09 20:01:22 -0500 (Wed, 09 Feb 2011) | 3 lines
  
  * src/math/spacegroup.cpp: Fix a typo.
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Unblocked revisions 4375 via svnmerge

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  r4375 | baoilleach | 2011-02-08 17:06:56 -0500 (Tue, 08 Feb 2011) | 1 line
  
  *format.cpp: Update Description() strings of several formats to improve online documentation. (Final edit)
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Merged revisions 4375 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4375 | baoilleach | 2011-02-08 17:06:56 -0500 (Tue, 08 Feb 2011) | 1 line
  
  *format.cpp: Update Description() strings of several formats to improve online documentation. (Final edit)
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Merged revisions 4358-4366 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4358 | chrismorl | 2011-01-13 15:32:19 -0500 (Thu, 13 Jan 2011) | 1 line
  
  MDLFormat. Truncate anything written to comment line to 80 chars
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  r4359 | chrismorl | 2011-01-13 15:34:31 -0500 (Thu, 13 Jan 2011) | 1 line
  
  Increase precision of HARTREE_TO_KCAL in GaussianOutputFormat
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  r4360 | chrismorl | 2011-01-13 15:38:00 -0500 (Thu, 13 Jan 2011) | 1 line
  
  Comment out some debugging code
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  r4361 | chrismorl | 2011-01-13 15:41:59 -0500 (Thu, 13 Jan 2011) | 1 line
  
  Add extra metadata to CML output
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  r4362 | chrismorl | 2011-01-13 15:49:00 -0500 (Thu, 13 Jan 2011) | 1 line
  
  Changes to Descriptions in InChiFormat (blank lines not compatible with GUI options) and SVGFormat (*2D* depiction - to discourage big biomolecules)
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  r4363 | ghutchis | 2011-01-14 15:36:41 -0500 (Fri, 14 Jan 2011) | 2 lines
  
  Adopted patch from John Bollinger to address Ruby bindings.
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  r4364 | ghutchis | 2011-01-14 15:56:05 -0500 (Fri, 14 Jan 2011) | 2 lines
  
  Added "none" charge model as suggested by Scott Brozell.
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  r4365 | cryosuk | 2011-01-15 13:10:53 -0500 (Sat, 15 Jan 2011) | 5 lines
  
  Added an ENABLE_SYMBOL_VISIBILITY option.
  
  The option defaults to OFF, if turned on the default visibility of symbols
  will be HIDDEN for GCC and Intel compilers on Unix platforms.
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  r4366 | chrismorl | 2011-01-25 10:02:35 -0500 (Tue, 25 Jan 2011) | 1 line
  
  Modified optswx.cpp so that "\n \n" in Descriptions() will not terminate a set of options in the GUI, helping co-existence with RestructuredText. Works ok with Noel's new povrayformat. Updated blank lines in inchiformat.h. 
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Merged revisions 4368-4374 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4368 | ghutchis | 2011-01-25 13:03:33 -0500 (Tue, 25 Jan 2011) | 2 lines
  
  Add Gaussian modifications to find correct orientations, contributed by Louis Ricard.
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  r4369 | baoilleach | 2011-01-26 06:43:15 -0500 (Wed, 26 Jan 2011) | 1 line
  
  Fingerprint format documentation for -xs 
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  r4370 | baoilleach | 2011-01-26 06:49:55 -0500 (Wed, 26 Jan 2011) | 1 line
  
  Fingerprint format documentation: Make it look nicer at the command line.
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  r4371 | chrismorl | 2011-01-26 10:03:45 -0500 (Wed, 26 Jan 2011) | 1 line
  
  Forgot to commit povrayformat.cpp
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  r4372 | baoilleach | 2011-01-26 12:41:14 -0500 (Wed, 26 Jan 2011) | 1 line
  
  Documentation fixes: Changes to description to improve compatibility with Sphinx and GUI.
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  r4373 | baoilleach | 2011-02-06 17:01:12 -0500 (Sun, 06 Feb 2011) | 1 line
  
  *format.cpp: Update Description() strings of several formats to improve online documentation.
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  r4374 | baoilleach | 2011-02-07 16:26:26 -0500 (Mon, 07 Feb 2011) | 1 line
  
  *format.cpp: Update Description() strings of several formats to improve online documentation.
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Merged revisions 4384,4389,4391 via svnmerge from 
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk

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  r4384 | dleidert | 2011-02-10 15:48:09 -0500 (Thu, 10 Feb 2011) | 8 lines
  
  doc/babel.1 is now also the manual page for obabel. Information about the
  differences between these tools have been added to doc/babel.1.
  
  doc/obabel.1 is a symlink to babel.1.
  
  Added doc/OBGUI.1 as a preliminary manual page for the GUI.
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  r4389 | ghutchis | 2011-02-15 15:16:10 -0500 (Tue, 15 Feb 2011) | 2 lines
  
  Remove debugging output on coordinate type.
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  r4391 | ghutchis | 2011-02-15 15:18:50 -0500 (Tue, 15 Feb 2011) | 4 lines
  
  Modify test for IsSetupNeeded() as contributed by Paolo Tosco.
  We can't just rely on BOSum -- we must ensure the bond structure is preserved.
  Ensures that similar but different molecules will be properly re-perceived.
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