cleared stringent defaults from set_somatic
strand must reflect both breakends for completeness
fixed evidence type annotation. also added strandedness to single line SVs for internal use
fixed IMPRECISE import
somatic fusion detection
tweak overview figure
Merge pull request #340 from cc2qe/sv

Gemini fusion annotation
[BUG] \--nonsynonymous option was broken
Merge branch 'master' of github.com:arq5x/gemini
Fix typo in Overview section
Merge pull request #342 from Shapez/master

Fix typo in Overview section
don't detect columns with GT in a larger word as genotype columns
Merge branch 'master' of github.com:arq5x/gemini
refine previous commit
fix windower defaults
first pass at clinvar causal allele
bug
update clinvar unit tests
missing file
Provide ability to update third party tools along with gemini itself