Merge branch 'release/0.1.2'
Merge branch 'release/0.1.3'
Merge branch 'release/0.1.4'
Merge branch 'release/0.1.5'
Merge branch 'release/0.1.6'
Merge branch 'release/0.2.0'
Merge branch 'release/0.2.1'
Account for lower-case nucleotides in reference
Update default ratios to those used for new method used in 0.2.0
Use Log::Reproducible in scripts called by core modules
Improve readability of conditional statements
Merge branch 'hotfix/0.2.2' into develop