changed to the new fitness metjod, and made it so that the lower fitness score is valued as better
almost found the correct peak, algorithm quit too soon. needs more leniant quit condition and/or improved mutation to each new population
reversed types
updated to use newer fitness score methods for comparable ratio, when creating the hyp snps ratio plot
first test of new fitness method with gifs
modified the umbrella plots to work with new fitness method
un commented quit condition
dataset for new fitness
made the fitness score a float
un comment
a change
annotated distance_score
algorithm runs alot faster with new fitness method, when not calculating ratios that were only needed for the old method
distribution plots can be made by calculating the ratios post-algorithm. may want to remove everything but the homozygous SNP plots later on
genome_length calculated within evolve method
redundant file tidy up
these methods used to create distribution plots
example perm methods unit tested, these methods used in restart section of algorithm_test.rb
tidied away files no longer being used
new fitness method and quit condition moved to inside GATOC