edited scripts to fit new paths and data
added script and functions to read Stacks population outputs
created function to read batch_1.sumstats.tsv
corrected typo in file path name
added function to read fat summary output file batch_1.fst_summary
plot allele freq spectrum and FIS
create and modify scripts for blasting
tune scripts to generate structure input file
regorganized paths and scripts for structure AllLoci
get working blast script against GP and R script to parse output
scripts to run populations with HitGP loci
added scripts to run an examine populations HitGP output
added lines to run fastSTRUCTURE with HitGP
added loops instead of stating the whole thing
how many sees recovered?
corrected typo in AllLoci script to generate structure files
added scripts and functions to run populations with Nohit loci
correct axis labels
add functions for excluding paralogs
created function  to extract potentially paralog loci