refs #9475. Skeleton algorithm.
refs #9475. Stop and hand over

I have deliberately left one failing unit test.
Refs #9475 More tests working, intersect bugfix

Fixed bug in x-intersect code

Got two more tests working and passing

Quashed a few warnings relating to double and unsigned int64 types
Refs #9475 Auto-format function over code

Just ran the VS2010 auto formatter over the code to indent things more consistantly
refs #9440. Multiple scale factor outputs.

Stitch1DMany adapted to give the scale factors for each Stitch1D step.
refs #9440. Update algorithm documentation.
refs #9440. Remove deprecated alg method usage.
Refs #9475 Fixed some copy-paste errors

There was an error in an output message, and an error in retrieving Y-values from the wrong workspace. Both seemed to be copy-paste errors, both easily fixed as all it ammounted to was 3 characters being changed.
Refs #9475 stiching tests

added 4 of the stitching tests: test_stitching_forces_start_overlap, test_stitching_forces_end_overlap, test_stitching_scale_right and test_stitching_scale_left
Refs #9475 Manual Scale Factor and related tests

Manual scale factor override is now implemented

Tests have been ported
Refs #9481 - Stop reduction on missing mask file.
Refs #9475 Fixing system and unit tests

Fixed a problem in the Stitch1DMany unit test where it wasn't converitng a double to a string

Stitch1D now tkaes range tollerences into account
Merge remote-tracking branch 'origin/master' into feature/9475_stich1d_cplusplus
Refs #9475 Docs and restructuring

Documentation has been added.

The algorithm identification methods have all been moved to the header to save space and the docstrings methods have been changed to the new summary method
refs #9475 Fixing build problems

Looks like the buildservers didn't like me plugging boost::assign::list_of straight into a function. I've moved all calls to it to a separate line assigning to a new variable in each instance
Skip properties directive if there are no properties

Refs #9562
Add an empty index file as Sphinx needs one to run successfully.

Refs #9562
Fix deprecated algorithm reference link.

Refs #9562
Disable QtAssistant for documentation transition

Refs #9562
Update README regarding images.

Refs #9562