fix expcov at 3 for comparison purposes
filter contigs from multiple files
stop w/o counting high-circumference kmer
Merge branch 'master' into break_circum
add Python API to break graph traversal on high-circumferecce k-mers
do a single-ended assembly
Merge branch 'master' into break_circum2
graph size filtering + circumference trimming, threaded
default suffix for graphsize+circ-trimmed files is graphcirc
turned off circumference breaking in graph-size.py
fixed threshold/break_on_circum code
remove PE foo
updated graph-size scripts to keep reads ordered, and to keep read pairs
added kmer counting/deviation functions for entire files
added in a garbage collect call
fixed script to use counting hash
Merge branch 'master' of github.com:ctb/khmer
degree splitting
two new utility scripts
hacked script to try a variety of k in assembly