change default BWT encoding in MausFmToBwaConversion
add checks for warning flags in configure.in
change warning flags in src/Makefile.am
add explicit undefined copy constructors
complete variable initialisation, replace old style cast
add FSM based BAM header parsing function
add missing initialisations
change return type for assignment operator in OutputBuffer class
- add missing virtual destructors
- add missing initialisations
- insert undefined copy constructors
add undefined copy constructor
- add undefined copy constructor
- add missing initialisations
add missing initialisations
- add undefined copy constructors
- add missing virtual destructors
- add missing field initialisations
remove old style casts
add missing virtual destructors
add missing initialisations
add missing initialisations
- add cast from enum to int
- add missing virtual destructor
add missing virtual destructor
add undefined copy constructor
add virtual destructor