Added column with gene names to outputfile for all heatmap data fetch jobs.
Added probe aggregation functionality to Heatmap scripts.
Adjusted function argument value according to requirements.
Moved probe.aggregation code-lines to seperate function.
Added probe aggregation functionality to KMeans clustered Heatmap analysis.
Change WGCNA package loading to conditional position.

Note: all analysis scripts need their own probe.aggregation function, because there is currently no global R sourcing support where the probe.aggregation function could reside.
Added probe aggregation functionality to Hierarchical clustering Heatmap analysis.

Also forgot to remove WCGNA package loading in main function of HeatmapLoader.R (since it is now loaded in the probe aggegation function).
Added probe aggregation functionality to PCA analysis.
Added tickbox for probe aggreagation in HDD window.

Also added probe aggregation value to show up in Summary after HDD window is closed.
 change name of gene/pathway parameter to what frontend wants, yet again...
Style inputs
Trivial change. Assign probe aggregation var to global scope
Use "checked" instead of "value" to get the ... value?
Ticket 227. Added LineGraph Y-axix labelling based on argument ‘HDD.data.type’

When argument has a value (default is NULL), it will be used as the y-axis label. Otherwise, the tail-end of the concept-path is used as a y-axis label (eg. ‘/Subject/Age/‘). In addition, the label will be suffixed by the type of statistic being plotted (ie. mean/median, se/sd).
Use "checked"
Adds probe aggregation argument
Adds probe aggregation argument to boxplot, heatmap, hierarchical clustering, KMeans, PCA
Bugfix. Changed trimming of concept path strings only in case there is something to trim (otherwise it would generate NAs)
Merge pull request #18 from thehyve/features/225-ui-high-dimensional-line-graph

Features/225 ui high dimensional line graph

Support for multiple high dimensional nodes not included yet.
Better inform the user of empty result sets