- Modified, RepairCLI, improved program options
	-	added long arg name for each option
	-	added help option
	-	added dependencies option (the arguments are not yet used)

- fixed https://github.com/zeminlu/stryker/issues/29
	-	BasicProgramRepairer: Comments on attributes are now javadoc

- fixed https://github.com/zeminlu/stryker/issues/27
	-	Renamed JMLProgram to JMLAnnotatedClass