Creation of Dev branch
not needed
test
fixed missing softClip check
Update DuplexMaker2.2.py
compute switchtag correctly
changed readMe
minor file name changes
Code cleanup
Minor code cleanup
xrange fix
Add --parallel option for parallelized bwa execution
removed extraneous samtools view command
minor bug fix
Merge branch 'Dev' of https://github.com/loeblab/Duplex-Sequencing into Dev
minor fixes
fixed bugs in BashMaker...fiddle with some more?
change prints to stderr.writes for future logging functionality
fix logging
implement logging