WIP: Update to latest versions of SciJava components

In particular, this updates to the release version of ImgLib2, making
necessary code changes to account for backwards incompatibilities.
POM: tidy up order of configuration blocks

Accomplished using:

    mvn tidy:pom
Merge branch 'master' into imglib2-release

Conflicts:
	pom.xml

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Fix compile problems link to removed imglib2 classes.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Remove usage of some deprecated methods.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Split <project> element, for readability
Make the build almost reproducible

This bumps to pom-fiji 5.0.7, which upgrades the 3D_Viewer
component to 3.0.1, its first non-tainted release.

It eliminates the following errors:

    $ mvn org.scijava:scijava-maven-plugin:0.3.0:verify-no-snapshots
    [ERROR] Could not resolve dependency: Dependency {groupId=sc.fiji, artifactId=fiji-lib, version=2.0.0, type=jar} of path:
            sc.fiji:VIB-lib:2.0.0
            sc.fiji:3D_Viewer:3.0.0
            sc.fiji:MaMuT_:0.13.1-SNAPSHOT
    [ERROR] Found SNAPSHOT version:
            sc.fiji:pal-optimization:2.0.0-SNAPSHOT
            sc.fiji:VIB-lib:2.0.0
            sc.fiji:3D_Viewer:3.0.0
            sc.fiji:MaMuT_:0.13.1-SNAPSHOT
    [ERROR] Found SNAPSHOT parent:
            sc.fiji:pom-fiji:2.0.0-SNAPSHOT
            sc.fiji:pal-optimization:2.0.0-SNAPSHOT
            sc.fiji:VIB-lib:2.0.0
            sc.fiji:3D_Viewer:3.0.0
            sc.fiji:MaMuT_:0.13.1-SNAPSHOT

There are still errors revolving around use of the BDV snapshot.
Depend on release versions of BDV components

This makes the build reproducible.
POM: add exclusions to make the enforcer happy

These are intended to be temporary, until problems are
eliminated upstream in parent POMs.
Merge branch 'imglib2-release'

This branch updates MaMuT to use the release version of ImgLib2, and
upgrades its build infrastructure to use the new pom-fiji 5.x series.
POM: bump to pom-fiji 5.0.8

This is the last of the 5.0.x series, untainted by bogus releases.