Add authors to readme and add name autopilot
Remove print statements, slowing down the analysis
Workshop specific changes to the pipeline, don't run PRISM since this requires a lot of memory. Change Pindel run setting, make the window smaller (less memory consumption)
Tool to convert deletions and insertions in a VCF to a "proper" VCF, including adding sequences and moving to leftmost possible positions
Resolve missing fasta library, use Biopython SeqIO to read fasta
Merge branch 'workshop' of ssh://github.com/ALLBio/allbiotc2 into workshop