Can detect Java "MEMLIMIT" errors
INSERT IGNORE allows to rerun the job
Only the "default" trees should create jobs
New module to run ProtTest
Included the TreeFam v10 species tree (with 347 species)
Moved the "escape_branch" concept to GenericRunnable
no warnings "recursion";
Added the ProtTest analysis in the pipeline
The memory for JAVA programs should be defined at the pipeline-config level
Updated pipeline structure with many _himem analysis
typo
Updated the options and the memory requirements
Revised the classification of lowe-confidence orthologues

There is no level3/4 any more. Instead, only the closest homologues
are recorded. It reduces the number of is_tree_compliant=0 {one,many}2many
but leaves the other categories identical
Merge branch 'tf'

* tf:
  Updated the options and the memory requirements
  typo
  Updated pipeline structure with many _himem analysis
  The memory for JAVA programs should be defined at the pipeline-config level
  Added the ProtTest analysis in the pipeline
  no warnings "recursion";
  Moved the "escape_branch" concept to GenericRunnable
  Included the TreeFam v10 species tree (with 347 species)
  New module to run ProtTest
  Only the "default" trees should create jobs
  INSERT IGNORE allows to rerun the job
  Can detect Java "MEMLIMIT" errors