Remove function that grabs wcratio near trnas. Add function troughsInWhichtRNAGeneFoundForChrom and troughsWhichAllContaintRNAGenes which have all troughs containing tRNA genes
Add this file because thought it would be useful to have a txt file that contained the names of the troughs for easier reference
Organize clusterTroughs.R script and added functions for generic chunks of code which need to be reused.
Add a script that finds CAG repeats in a fasta sequence file which is yeastgenome.fa
Add all files updated today