Fix incorrect integration of BallJoint and FreeJoint using modified integration API

+ Modify the integration API;

Explicit Euler integration with previous API:
```c++
    Eigen::VectorXd deriv = _system->evalDeriv();
    _system->setState(system->getState() + (_dt * deriv));
```
Explicit Euler integration with modified API:
```c++
  _system->integrateConfigs(_system->getGenVels(), _dt);
  _system->integrateGenVels(_system->evalGenAccs(), _dt);
```

+ Fix `BallJoint` and `FreeJoint` integration using the modified API (Fix #122)
+ `SemiImplicitIntegrator` is added
+ Note: New API did not slow down the performance comparing with DART 3.0.