importing into temp table in attached database doesn't work (yet)
Changes on the road
Merge branch 'ontheroad' into devel
Importing transcripts directly into the species database now

the sqlite command line tool can't do ".import"s on attached databases,
apparently, so this is a workaround.
Removed whitespace from sqlite database names
Oops
Oops again
Bug fix; needed to create output dir before creating sqlite db file
Tiny change, making debugging easier
Bug fix: push the actual filtered hits to database, not the filter rubbish
Bug fix
Another bug fix
started taking ORF overlap into account
Removed superfluous code, continued ORF overlap checking
Minor changes, more informative log output
Added reftaxon returning
Fixed reftaxon determination
bug fix
Reftaxon done
Fixed database creation with template config file