runSOM is now saving all files
Merge branch 'master' of git.cs.swarthmore.edu:brainseg2014
Moving files and minor changes
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Adding minor changes to the SVM and general running SOM code as well as the batch files for coregistering all of our images
Changing runSOM to use tissue files
Redid code to work with new segmentations
Adding minor changes for mem management in runSVM
Changes?
Fixed minor merge conflict
Added convertROItoNII
Minor changes in WML code to attempt to do anomylous classification; small SOM svm changes
Merge branch 'master' of git.cs.swarthmore.edu:brainseg2014
Added updated code
Merge branch 'master' of git.cs.swarthmore.edu:brainseg2014
Changing the SOM pipeline to run with SLIC as well as variuous SOM tests