switched to chr 20
added recalibration
added phasing
cleanup order
directory layers added
added snpeff
make manifest
readme
ped file
README updates
pre PEP8
post pep8
snakemake workflows removed
java_cmd separated from gatk, snpeff
java_cmd in config
snpeff
support list of genes to get ranges
range support, fixed MANIFEST
json fix
ranges.list