added alignment status for normal and tumor specimens, added gnos info
add code to add various flags to pcawg donors using manually maintained annotation files
add more case for filtering out test GNOS entries
wrote a new report, updated kibana template
add new report in run_me
update gnos_repo field to original_gnos_assignment
updated donor blacklist and train2 donor list
added LINC-JP
added code to deal with gnos repo not assigned situation, unlikely but if it happens the script will not error out
Merge pull request #5 from ICGC-TCGA-PanCancer/jz_multi_gnos

Jz multi gnos