Move the link to JBoss' Maven repository to TrakEM2_/

It is only needed for the JAI dependencies.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Add links to ImageJDev's Maven repository everywhere

This is needed when adding TrakEM2 as a dependency to other Maven
projects so that the parent project -- pom-trakem2 -- can be found.

Note: as MiniMaven adds the ImageJDev Maven repositories by default,
this is solely to accomodate 'real' Maven.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
adjust mpicbg spring-mesh2 which needs less damping
use arraylist where arraylists are returned
Merge branch 'master' into spring-mesh2
Add HomographyModel2D as a possible ict_transform.
Merge pull request #1 from perlman/master

Add HomographyModel2D as an ict_transform
Fix TrakEM2_ dependency versions in plugins

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Merge pull request #3 from fiji/fix-trakem2-dependency-version

Fix TrakEM2_ dependency versions in plugins
Typo in comment.
Prevent NullPointerException when creating a sibling Project.
Thanks to Stephan Preibisch for reporting.
Fixing VectorString2D.resample, almost there.
Further fixes to VectorString2D.resample.
And removed all resample method.
Satisfactorily fixed VectorString2D.resample to not fail in some rare cases.

Survives all tests so far.
This fixes were motivated by the error encountered by Emily Capaldo
when attempting to measure an AreaList.
Added Project - Measurement Options...
 * adjust the resampling for measuring AreaList
 * enable measuring the maximum diameter of an AreaList
   (potentially a very expensive operation, now disabled by default)
Minor fix to last commit on VectorString2D.resample.
Namely, bring MAX_DISTANCE back to 2.5 delta as it has always been, for consistency.
Created M.convolveGaussianSigma1 for convolving float arrays.
AreaList.measure uses a safer and better method for smoothing the perimeter
consisting in convolving the perimeter with a gaussian and then resampling
to the desired resolution as specified in "Project - Measurement Options..."

The perimeter must be smoothed given its boxy, pixelated edges
to obtain any realistically approximate measurement.
New util class CircularSequence
VectorString2D.resample now uses ImageJ's Roi.getInterpolatedPolygon
but adapted to work with double arrays, after a convolution with
a Gaussian of sigma=1.