Version: 0.4.31 [2014-03-10]
o ROBUSTNESS: Now bowtie2(), bowtie2Build(), bwaAln(), bwaIndex() and so
  on use shQuote() for all pathnames.
o ROBUSTNESS: Now process() for HTSeqCounting validates that the GTF
  file has chromsome names in a format that matched the BAM files.
  If not, an error is thrown.
o SPEEDUP: Now htseqCount() only workaround non-supported BAM files
  for older version of htseq-count.
o Added getSeqNames() for GtfDataFile.


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3573 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
git-svn-id: svn://svn.r-forge.r-project.org/svnroot/aroma-dots@3574 edb9625f-4e0d-4859-8d74-9fd3b1da38cb