starting v0.1.1
Major modification is on better kmer matching range calculation
Move to proper sparse dynamic program or another new statitical method to be
developed
add experimental matching code for raw sequences
some testing data
add new range finder using proper dynamic programming and generate
the number of hit with the range.
add new range finder using proper dynamic programming and generate
the number of hit with the range.
Merge branch 'v0.1.1' of github-PBI:PacificBiosciences/FALCON into ma_v0.1.1
fix typo
remove debug code. really fix the typos this time
Update install_note.sh

fix environment variable inconsistency
Merge branch 'patch-1' of https://github.com/cschin/FALCON-1 into v0.1.1
OK, this is a verstion that is sort of working for replacing blasr for
raw sequence reads matches.
Add simple chimer & spur detection in the string graph
rename falcon_readmatch_q.py -> falcon_qrm.py
better graph branch detection to avoid "false positive" in mis-assembly breaking
rename the variable to what it actually means
remove old files
falcon_qrm.py : indexing more regions to increase sensitivity
more sensitive indexing scheme for overlapping
fall back to indexing only the ends of the reads
An example and the setup for the D. mel assembly on AWS EC2
add snapshot id.
well, using different instance type with StarCluster is tricky
make github markdown engine happier