Switched from ramp_steps to TimeRamps.

Each restraint now has its own individually
controllable time ramp, which allows for more
flexibility in designing protocols. E.g. now
one set of restraints can phase in at the
beginning. A second set can phase in after
some equilibration time.

Note: all scripts will need to be modified as
      the MasterRunner no longer takes a
      ramp_steps argument.