fixed soma_and_geno, removed extra multiplication step, set dm_disp default to 1000
sample input file for use in driver
minor Python style changes
fixed scale_to_log
wrote driver to process pileup files, created samples folder
updated pileup files to include threshold value
added simulation program
refactored simulation file
fixed typo and function names
wrote SimulationModel class, set dispersion back to 1000
removed old simulation file
wrote simulation_driver.py to output the probabilities of any number of random samples
updated documentation to include object types
modified format of simulation output, changed double to single quotes
added script to calculate percentage off sites with a mutation
fixed typo in output of count_bin.py
increased mutation rate in simulation, fixed bin script to bin sites with prob greater than some value
updated simulation to bin prob every 10% range
refactored count_bin.py
refactored simulation code to use indices