Fixed some errors in database

One of the kinetics libraries had a strange format for the line breaks, using
only carriage returns (CR) and no line feeds (LF). This doesn't cause any
errors in Java, but it does when trying to import into python. I know there is
at least one more instance of this, but I'm leaving it in for further
testing I will do soon.

The other errors were adjacency list typos in some of the thermo groups,
that made the adjacency list self-inconsistent or otherwise invalid. RMG runs
even though these errors were present, which is worrisome.