Changed the logging level to see the effect of it being overriden by the import. Also handle the disabled flag properly
* Added the creation of TransferEoR file indicating if the run
  is open or closed by the absence or presence of the EoR file.
* Hacked the logging so that importing from the merger code does
  not impact its configuration
* Added missing reference to self in a class method
Setup for bookkeeping automation: use production data base, no dry run, and fill missing lumis (should not be needed?). Updated TODO list
Added iterations over the input path and updated the TODO list for the eor.py
Log into a file
Use the old test run again
Updated TODO