igv 2.3.34

Closes #1048.
nextflow 0.8.3: New formula

Closes #1039
gmsh: update to 2.8.5

Closes #1052.
ASL: upgrade to 20140704

Fixes #1056.
kmerstream 1.0: New formula

KmerStream: Streaming algorithms for k-mer abundance estimation
bowtie: fix build with gcc-4.8
ucsc-genome-browser 302
openblas 0.2.9

Add --devel 0.2.10-rc2.

Closes #1038.
tbl2asn 23.6
Use patch DSL
emboss: add mirror
gmt4: update gshhg resource
gmt: update gshhg resource
getdp: update to 2.4.4

Removed the library fix (line 55) because now also corrected upstream

Closes #1061.
R 3.1.1

Release notes: https://stat.ethz.ch/pipermail/r-announce/2014/000575.html

Closes #1058.
arpack: fix symlink overwriting pkgconfig directory

Closes #1059.
bwa 0.7.10
genometools 1.5.3
openbr: fix version
jellyfish 2.1.3

Builds with newer compilers.